Serialized Form

Package org.mathIT.algebra
- Class org.mathIT.algebra.MathSet extends HashSet<E> implements Serializable
  
  serialVersionUID:
  
  9223372035065452569L
- Class org.mathIT.algebra.OrderedSet extends TreeSet<E extends Comparable<E>> implements Serializable
  
  serialVersionUID:
  
  9223372035314726100L
- Class org.mathIT.algebra.Polynomial extends TreeMap<Integer,Double> implements Serializable
  
  serialVersionUID:
  
  913625844L
  - Serialized Fields
    - ec
```
ExponentComparator ec
```
- Class org.mathIT.algebra.PolynomialZ extends TreeMap<BigInteger,BigInteger> implements Serializable
  
  serialVersionUID:
  
  -1742369818L
  - Serialized Fields
    - ec
```
BigExponentComparator ec
```
- Class org.mathIT.algebra.Set extends HashSet<E> implements Serializable
  
  serialVersionUID:
  
  1120767115L
Package org.mathIT.genes
- Class org.mathIT.genes.DNA extends Object implements Serializable
  
  serialVersionUID:
  
  9223372036854707976L
  - Serialized Fields
    - name
```
String name
```
      The name of this genome.
    - sequence
```
long[] sequence
```
      The nucleobase sequence of this genome.
    - length
```
int length
```
      The length of this nucleobase sequence, i.e., the number of letters T, C, A, G.
    - frequency
```
TreeMap<K,V> frequency
```
      The relatuve frequency distribution of the 5 nucleobases. Each frequency is given in %.
- Class org.mathIT.genes.Genome extends Object implements Serializable
  
  serialVersionUID:
  
  2129332503L
  - Serialized Fields
    - name
```
String name
```
      The name of this genome.
    - sequence
```
long[] sequence
```
      The nucleobase sequence of this genome.
    - size
```
int size
```
      The number of nucleobases of this genome.
    - frequencies
```
TreeMap<K,V> frequencies
```
      The absolute frequency distribution of the nucleobases.
    - pairFrequencies
```
TreeMap<K,V> pairFrequencies
```
      The absolute frequencies of nucleobase pairs of the sequence of this genome.
    - tripletFrequencies
```
TreeMap<K,V> tripletFrequencies
```
      The absolute frequencies of nucleobase triplets of the sequence of this genome.
- Class org.mathIT.genes.ORF extends Object implements Serializable
  
  serialVersionUID:
  
  9223372036854697276L
  - Serialized Fields
    - info
```
String info
```
      Information about this ORF.
    - sequence
```
long[] sequence
```
      The codon sequence of this gene.
- Class org.mathIT.genes.Protein extends Object implements Serializable
  
  serialVersionUID:
  
  9223372035499135132L
  - Serialized Fields
    - name
```
String name
```
      The name of this protein.
    - sequence
```
long[] sequence
```
      The amino acid sequence of this protein.
    - size
```
int size
```
      The number of amino acids of this protein.
    - frequencies
```
TreeMap<K,V> frequencies
```
      The absolute frequency distribution of the amino acids.
    - pairFrequencies
```
TreeMap<K,V> pairFrequencies
```
      The absolute frequency of amino acid pairs of the sequence of this protein.
    - tripletFrequencies
```
TreeMap<K,V> tripletFrequencies
```
      The absolute frequencies of amino acid triplets of the sequence of this protein.
Package org.mathIT.gui
- Class org.mathIT.gui.GraphCanvas extends VisualizationViewer<V extends Vertible<V>,E> implements Serializable
  
  serialVersionUID:
  
  2011128184L
  - Serialized Fields
    - gv
```
GraphViewer<V extends Vertible<V>,E> gv
```
      The graphviewer object to be plotted.
- Class org.mathIT.gui.GraphViewer extends JFrame implements Serializable
  - Serialized Fields
    - instructions
```
String instructions
```
    - invokerGraph
```
Graph<V extends Vertible<V>> invokerGraph
```
      The graph of the mathIT class Graph that is invoked to be copied to the format compatible with this viewer.
    - graph
```
Graph<V,E> graph
```
      The graph of the mathIT class Graph that is invoked to be copied to the format compatible with this viewer.
    - canvas
```
GraphCanvas<V extends Vertible<V>,E> canvas
```
      The visual component and renderers for the graph
    - layout
```
Layout<V,E> layout
```
      The layout in which the graph is drawn.
    - scaler
```
ScalingControl scaler
```
    - content
```
Container content
```
    - controls
```
JPanel controls
```
    - zoomControls
```
JPanel zoomControls
```
    - layoutChoice
```
JPanel layoutChoice
```
    - jcb
```
JComboBox<E> jcb
```
    - edgeLabels
```
JCheckBox edgeLabels
```
    - edgePanel
```
JPanel edgePanel
```
    - gzsp
```
GraphZoomScrollPane gzsp
```
    - modePanel
```
JPanel modePanel
```
    - modeBox
```
JComboBox<E> modeBox
```
    - clusterControls
```
JPanel clusterControls
```
    - matrixControls
```
JPanel matrixControls
```
    - buttonPanel
```
JPanel buttonPanel
```
    - print
```
JButton print
```
    - help
```
JButton help
```
    - save
```
JButton save
```
    - load
```
JButton load
```
- Class org.mathIT.gui.MatrixAlgebra extends JFrame implements Serializable
  
  serialVersionUID:
  
  8598673622635355958L
  - Serialized Fields
    - A
```
Matrix A
```
      First matrix to be operated upon.
    - B
```
Matrix B
```
      Second matrix to be operated upon. It is ignored in case of unary operators.
    - resultMatrix
```
Matrix resultMatrix
```
      Resulting matrix of the current operation. It is null if the result is not a matrix (for instance the determinant).
    - exponent
```
int exponent
```
      Currently offered matrix exponent. It is updated by clicking the exponent button.
    - cancelButton
```
JButton cancelButton
```
      for test purposes ...
    - controlPanel
```
JPanel controlPanel
```
    - detButton
```
JButton detButton
```
    - detPanel
```
JPanel detPanel
```
    - emptyLabel1
```
JLabel emptyLabel1
```
    - emptyLabel2
```
JLabel emptyLabel2
```
    - emptyLabel3
```
JLabel emptyLabel3
```
    - emptyLabel4
```
JLabel emptyLabel4
```
    - inputPanel
```
JPanel inputPanel
```
    - jScrollPaneA
```
JScrollPane jScrollPaneA
```
    - jScrollPaneB
```
JScrollPane jScrollPaneB
```
    - jScrollPaneResult
```
JScrollPane jScrollPaneResult
```
    - jSeparator1
```
JSeparator jSeparator1
```
    - loadAButton
```
JButton loadAButton
```
    - loadBButton
```
JButton loadBButton
```
    - loadFormatCheckBox
```
JCheckBox loadFormatCheckBox
```
    - matrixAInput
```
JPanel matrixAInput
```
    - matrixATable
```
JTable matrixATable
```
    - matrixBInput
```
JPanel matrixBInput
```
    - matrixBTable
```
JTable matrixBTable
```
    - minusButton
```
JButton minusButton
```
    - minusPanel
```
JPanel minusPanel
```
    - operationsLabel
```
JLabel operationsLabel
```
    - operatorInput
```
JPanel operatorInput
```
    - outputArea
```
JLabel outputArea
```
    - plusButton
```
JButton plusButton
```
    - plusPanel
```
JPanel plusPanel
```
    - powerButton
```
JButton powerButton
```
    - powerDecrementButton
```
JButton powerDecrementButton
```
    - powerDecrementPanel
```
JPanel powerDecrementPanel
```
    - powerPanel
```
JPanel powerPanel
```
    - resultPanel
```
JPanel resultPanel
```
    - saveResultButton
```
JButton saveResultButton
```
    - timesButton
```
JButton timesButton
```
    - timesPanel
```
JPanel timesPanel
```
- Class org.mathIT.gui.MessageFrame extends JFrame implements Serializable
  
  serialVersionUID:
  
  -1082511041L
  - Serialized Fields
    - closeButton
```
JButton closeButton
```
      This method serves for test purposes...
    - closePanel
```
JPanel closePanel
```
    - leftPanel
```
JPanel leftPanel
```
    - rightPanel
```
JPanel rightPanel
```
Package org.mathIT.numbers
- Class org.mathIT.numbers.Factors extends TreeMap<BigInteger,Integer> implements Serializable
  
  serialVersionUID:
  
  572770532L
- Class org.mathIT.numbers.Quaternion extends Number implements Serializable
  
  serialVersionUID:
  
  9223372036485945537L
  - Serialized Fields
    - z
```
double[] z
```
      Object attribute representing a quaternion.
Package org.mathIT.plot
- Class org.mathIT.plot.ComplexPlotPane extends JPanel implements Serializable
  
  serialVersionUID:
  
  -158918979L
  - Serialized Fields
    - meshNodesX
```
int meshNodesX
```
      number of mesh nodes in x-direction.
    - meshNodesY
```
int meshNodesY
```
      number of mesh nodes in y-direction.
    - numberOfFunctions
```
int numberOfFunctions
```
    - width
```
int width
```
    - height
```
int height
```
    - xmin
```
double xmin
```
      lower limit of x.
    - xmax
```
double xmax
```
      upper limit of x.
    - ymin
```
double ymin
```
      lower limit of y.
    - ymax
```
double ymax
```
      upper limit of y.
    - zmin
```
double zmin
```
      lower limit of z.
    - zmax
```
double zmax
```
      upper limit of z.
    - realPart
```
boolean realPart
```
      indicates whether the real part of the function is plotted.
    - imaginaryPart
```
boolean imaginaryPart
```
      indicates whether the imaginary part of the function is plotted.
    - zAuto
```
boolean zAuto
```
      indicates whether the z-limits are calculated automatically.
    - zRatio
```
boolean zRatio
```
      indicates whether the x/y-z ratio are the same.
    - vxmin
```
int vxmin
```
      minimum projected x-value.
    - vxmax
```
int vxmax
```
      maximum projected x-value.
    - vymin
```
int vymin
```
      minimum projected y-value.
    - vymax
```
int vymax
```
      maximum projected y-value.
    - drawAxes
```
boolean drawAxes
```
      Indicates whether coordinate axes are drawn.
    - isPrinting
```
boolean isPrinting
```
      Indicates whether a coordinate grid is drawn.
    - functions
```
String[] functions
```
    - parser
```
FunctionParser parser
```
    - steps
```
int steps
```
      step width in pixels the graph is plotted with.
    - background
```
Color background
```
    - axesColor
```
Color axesColor
```
    - ticksColor
```
Color ticksColor
```
    - projectedLineColor
```
Color projectedLineColor
```
    - criticalLineColor
```
Color criticalLineColor
```
    - surface
```
double[][][][] surface
```
      array of arrays containing the function values.
    - xLine
```
double[][][] xLine
```
      represents the x-coordinate projected on each surface.
    - yLine
```
double[][][] yLine
```
      represents the y-coordinate projected on each surface.
    - criticalLine
```
double[][][] criticalLine
```
      represents the critical line projected on each surface (only important for zeta function).
    - surfaceColor
```
Color[] surfaceColor
```
      array containing the area colors.
    - lineStrength
```
byte[] lineStrength
```
      array containing the area colors.
    - angleX
```
double angleX
```
      rotation angle of (projected) coordinate frame around the screen x-axis.
    - angleY
```
double angleY
```
      rotation angle of (projected) coordinate frame around the screen y-axis.
    - xTicks
```
double[] xTicks
```
    - yTicks
```
double[] yTicks
```
    - zTicks
```
double[] zTicks
```
    - oneDigit
```
DecimalFormat oneDigit
```
    - lastX
```
int lastX
```
      Holds the coordinates of the user's last mousePressed event.
    - lastY
```
int lastY
```
      Holds the coordinates of the user's last mousePressed event.
    - mouseButton
```
int mouseButton
```
- Class org.mathIT.plot.Plot3DPane extends JPanel implements Serializable
  
  serialVersionUID:
  
  1102231994L
  - Serialized Fields
    - meshNodesX
```
int meshNodesX
```
      number of mesh nodes in x-direction.
    - meshNodesY
```
int meshNodesY
```
      number of mesh nodes in y-direction.
    - numberOfFunctions
```
int numberOfFunctions
```
      width of plotted mesh (in pixels). Must be a multiple of resolution.
    - width
```
int width
```
    - height
```
int height
```
    - xmin
```
double xmin
```
      lower limit of x.
    - xmax
```
double xmax
```
      upper limit of x.
    - ymin
```
double ymin
```
      lower limit of y.
    - ymax
```
double ymax
```
      upper limit of y.
    - zmin
```
double zmin
```
      lower limit of z.
    - zmax
```
double zmax
```
      upper limit of z.
    - zAuto
```
boolean zAuto
```
      indicates whether the z-limits are calculated automatically.
    - zRatio
```
boolean zRatio
```
      indicates whether the x/y-z ratio are the same.
    - vxmin
```
int vxmin
```
      minimum projected x-value.
    - vxmax
```
int vxmax
```
      maximum projected x-value.
    - vymin
```
int vymin
```
      minimum projected y-value.
    - vymax
```
int vymax
```
      maximum projected y-value.
    - drawTicks
```
boolean drawTicks
```
      Indicates whether coordinate ticks are drawn.
    - drawGrid
```
boolean drawGrid
```
      Indicates whether a coordinate grid is drawn.
    - border
```
int border
```
      thickness of the plot pane border (in pixel).
    - isPrinting
```
boolean isPrinting
```
    - parser
```
FunctionParser parser
```
    - steps
```
int steps
```
      step width in pixels the graph is plotted with.
    - background
```
Color background
```
    - axesColor
```
Color axesColor
```
    - ticksColor
```
Color ticksColor
```
    - gridColor
```
Color gridColor
```
    - projectedLineColor
```
Color projectedLineColor
```
    - surface
```
double[][][] surface
```
      array of arrays containing the function values.
    - xLine
```
double[][] xLine
```
      represents the x-coordinate projected on each surface.
    - yLine
```
double[][] yLine
```
      represents the x-coordinate projected on each surface.
    - surfaceColor
```
Color[] surfaceColor
```
      array containing the area colors.
    - lineStrength
```
byte[] lineStrength
```
      array containing the area colors.
    - angleX
```
double angleX
```
      rotation angle of (projected) coordinate frame around the screen x-axis.
    - angleY
```
double angleY
```
      rotation angle of (projected) coordinate frame around the screen y-axis.
    - xScale
```
double xScale
```
      scale factor for x-values.
    - yScale
```
double yScale
```
      scale factor for y-values.
    - zScale
```
double zScale
```
      scale factor for y-values.
    - xTicks
```
double[] xTicks
```
    - xTicksPixel
```
int[] xTicksPixel
```
    - yTicks
```
double[] yTicks
```
    - yTicksPixel
```
int[] yTicksPixel
```
    - zTicks
```
double[] zTicks
```
    - oneDigit
```
DecimalFormat oneDigit
```
    - lastX
```
int lastX
```
      Holds the coordinates of the user's last mousePressed event.
    - lastY
```
int lastY
```
      Holds the coordinates of the user's last mousePressed event.
- Class org.mathIT.plot.PlotPane extends JPanel implements Serializable
  
  serialVersionUID:
  
  -1955500023L
  - Serialized Fields
    - numberOfFunctions
```
int numberOfFunctions
```
    - width
```
int width
```
    - height
```
int height
```
    - ox
```
int ox
```
      x-value of the origin.
    - oy
```
int oy
```
      y-value of the origin.
    - xmin
```
double xmin
```
      lower limit of x.
    - xmax
```
double xmax
```
      upper limit of x.
    - ymin
```
double ymin
```
      lower limit of y.
    - ymax
```
double ymax
```
      upper limit of y.
    - yAuto
```
boolean yAuto
```
      indicates whether the y-limits are calculated automatically.
    - yRatio
```
boolean yRatio
```
      indicates whether the x-y ratio are the same.
    - drawTicks
```
boolean drawTicks
```
      Indicates whether coordinate ticks are drawn.
    - drawGrid
```
boolean drawGrid
```
      Indicates whether a coordinate grid is drawn.
    - border
```
int border
```
      thickness of the plot pane border (in pixel).
    - initialPlot
```
boolean initialPlot
```
    - isPrinting
```
boolean isPrinting
```
    - parser
```
FunctionParser parser
```
    - steps
```
int steps
```
      step width in pixels the graph is plotted with.
    - background
```
Color background
```
    - axesColor
```
Color axesColor
```
    - ticksColor
```
Color ticksColor
```
    - gridColor
```
Color gridColor
```
    - fPixels
```
int[][] fPixels
```
      array of arrays containing the function pixel values.
    - lineColor
```
Color[] lineColor
```
      array containing the line colors.
    - linewidth
```
byte[] linewidth
```
      array containing the line widths.
    - xScale
```
double xScale
```
      scale factor for x-values.
    - yScale
```
double yScale
```
      scale factor for y-values.
    - xTicks
```
double[] xTicks
```
    - xTicksPixel
```
int[] xTicksPixel
```
    - yTicks
```
double[] yTicks
```
    - yTicksPixel
```
int[] yTicksPixel
```
    - oneDigit
```
DecimalFormat oneDigit
```
    - lastX
```
int lastX
```
      Holds the coordinates of the user's last mousePressed event.
    - lastY
```
int lastY
```
      Holds the coordinates of the user's last mousePressed event.
    - mouseDragged
```
boolean mouseDragged
```
Package org.mathIT.quantum
- Class org.mathIT.quantum.Circuit extends ArrayList<QuantumGate> implements Serializable
  
  serialVersionUID:
  
  -1847355447L
  - Serialized Fields
    - xRegister
```
Register xRegister
```
      The x-register.
    - yRegister
```
Register yRegister
```
      The y-register.
    - xRegisterSize
```
int xRegisterSize
```
      The number of qubits of the x-register.
    - yRegisterSize
```
int yRegisterSize
```
      The number of qubits of the y-register.
    - numberOfWires
```
int numberOfWires
```
      The number of qubits of both the x-register and the y-register.
    - nextGateNumber
```
int nextGateNumber
```
      Number of the gate to be executed next during the execution of this quantum circuit. If the circuit is in its initial state, the number is 0.
- Class org.mathIT.quantum.NoWireException extends Exception implements Serializable
  
  serialVersionUID:
  
  83624169L
- Class org.mathIT.quantum.QuantumGate extends Object implements Serializable
  
  serialVersionUID:
  
  1488467558L
  - Serialized Fields
    - name
```
String name
```
      specifies the name of this quantum gate. It is uniquely related to a quantum operation.
    - qubits
```
int[] qubits
```
      specifies the index of qubits on which the gate operates. For a controlled gate, the last entry always is the target qubit. However, for a Grover operator gate, this field is abused to specify the "needle", i.e., the value which is known to the oracle but which can only be found after successive Grover iterations.
    - yRegister
```
boolean yRegister
```
      specifies if the gate operates on the y-register. If not, the x-register is acted on.
    - function
```
FunctionParser function
```
      the parsed function for the function evaluation gate U_f. It is null for all other gates.
    - axis
```
String axis
```
      The axis of rotation, if this gate represents a qubit rotation.
    - phiAsPartOfPi
```
int phiAsPartOfPi
```
      rotation angle, as the integral part n of π. More accurately, n = π/φ where φ is the rotation angle in radians.
Package org.mathIT.quantum.stabilizer
- Class org.mathIT.quantum.stabilizer.Circuit extends ArrayList<QuantumGate> implements Serializable
  
  serialVersionUID:
  
  -1847355447L
  - Serialized Fields
    - xRegister
```
Register xRegister
```
      The x-register.
    - yRegister
```
Register yRegister
```
      The y-register.
    - xRegisterSize
```
int xRegisterSize
```
      The number of qubits of the x-register.
    - yRegisterSize
```
int yRegisterSize
```
      The number of qubits of the y-register.
    - numberOfWires
```
int numberOfWires
```
      The number of qubits of both the x-register and the y-register.
    - nextGateNumber
```
int nextGateNumber
```
      Number of the gate to be executed next during the execution of this quantum circuit. If the circuit is in its initial state, the number is 0.
Package org.mathIT.util
- Class org.mathIT.util.FunctionParser extends Object implements Serializable
  
  serialVersionUID:
  
  2084972087L
  - Serialized Fields
    - functions
```
ArrayList<E> functions
```
      An array list containing a list of functions in postfix notation.
- Class org.mathIT.util.TermParser extends Object implements Serializable
  
  serialVersionUID:
  
  -42580021L
  - Serialized Fields
    - formula
```
String[] formula
```
      The formula in postfix notation.
- Class org.mathIT.util.Tuple extends Object implements Serializable
  
  serialVersionUID:
  
  9223372036773603415L
  - Serialized Fields
    - elements
```
ArrayList<E> elements
```
      List of elements of this tuple.

Serialized Form

Package org.mathIT.algebra

Class org.mathIT.algebra.MathSet extends HashSet<E> implements Serializable

Class org.mathIT.algebra.OrderedSet extends TreeSet<E extends Comparable<E>> implements Serializable

Class org.mathIT.algebra.Polynomial extends TreeMap<Integer,Double> implements Serializable

Serialized Fields

ec

Class org.mathIT.algebra.PolynomialZ extends TreeMap<BigInteger,BigInteger> implements Serializable

Serialized Fields

ec

Class org.mathIT.algebra.Set extends HashSet<E> implements Serializable

Package org.mathIT.genes

Class org.mathIT.genes.DNA extends Object implements Serializable

Serialized Fields

name

sequence

length

frequency

Class org.mathIT.genes.Genome extends Object implements Serializable

Serialized Fields

name

sequence

size

frequencies

pairFrequencies

tripletFrequencies

Class org.mathIT.genes.ORF extends Object implements Serializable

Serialized Fields

info

sequence

Class org.mathIT.genes.Protein extends Object implements Serializable

Serialized Fields

name

sequence

size

frequencies

pairFrequencies

tripletFrequencies

Package org.mathIT.gui

Class org.mathIT.gui.GraphCanvas extends VisualizationViewer<V extends Vertible<V>,E> implements Serializable

Serialized Fields

gv

Class org.mathIT.gui.GraphViewer extends JFrame implements Serializable

Serialized Fields

instructions

invokerGraph

graph

canvas

layout

scaler

content

controls

zoomControls

layoutChoice

jcb

edgeLabels

edgePanel

gzsp

modePanel

modeBox

clusterControls

matrixControls

buttonPanel

print

help

save

load

Class org.mathIT.gui.MatrixAlgebra extends JFrame implements Serializable

Serialized Fields

A

B

resultMatrix

exponent

cancelButton

controlPanel

detButton

detPanel

emptyLabel1

emptyLabel2

emptyLabel3